Volume 2 : Data Entry
1
Introduction
1.1
Authors
2
Getting Started
2.1
Overview
2.2
Getting Started
2.2.1
Sign up for BETYdb
2.2.2
Other Accounts
3
Finding and Preparing Published Data
3.1
Meta-analyses
3.2
Preparing Publications for Data Entry
3.2.1
Mendeley
3.2.2
Recording extracted data and transformations
4
Entering Meta-Data
4.1
BETYdb web interface
4.1.1
Adding a Citation
4.1.2
Adding a Site
4.1.3
Adding Treatments and Managements
4.1.4
Adding a PFT, Species, or Cultivar
4.2
BETYdb-YABA and Python Client Library
4.3
SQL
4.3.1
Metadata Entry Workflow for BETYdb
4.3.2
Step 1: Add new experiments
4.3.3
Step 2: Add new sites
4.3.4
Step 3: Add new treatments
4.3.5
Step 4: Add new cultivars
4.3.6
Step 5: Add new citations
4.3.7
Step 6: Associate experiments with sites
4.3.8
Step 7: Associate experiments with treatments
4.3.9
Step 8: Associate sites with cultivars
4.3.10
Step 9: Associate sites with citations
4.4
Removing duplicate records
5
Adding Trait and Yield Data
5.1
The New Trait and New Yield Pages
5.1.1
Adding a Trait
5.1.2
Adding a Yield
5.1.3
Adding a Covariate
5.2
Bulk Upload
5.2.1
Overview
5.2.2
Detailed CSV Data File Specifications
5.2.3
Using the Bulk Upload Wizard
5.2.4
Troubleshooting
6
Inserting New Traits Via the API
6.1
Trait Insertion Endpoint.
6.2
Format of Data Files
6.2.1
Schema for XML Data Files
6.2.2
Schema for JSON Data Files
6.2.3
Schema for CSV Data Files
6.3
Error Feedback
6.3.1
Authorization Errors
6.3.2
Lookup Errors
6.3.3
Schema Validation Errors
6.3.4
Model Validation Errors
6.4
Running the Examples
6.4.1
Using curl to Upload the Data Samples
6.5
Known Bugs
Appendices
A
Quality Assurance
B
Extracting information from figures
For more information:
C
Estimating Standard Error from other summary statistics (
P
,
LSD
,
MSD
)
Further Reading
D
Common Unit Conversions
Acknowledgements
Developers
Contributors
Funding Sources
Biofuel Ecophysiological Traits and Yields Database
Biofuel Ecophysiological Traits and Yields Database
By: BETYdb Team
2020-07-31
Volume 2 : Data Entry