29 PEcAn Models

This section will contain information about all models and output variables that are supported by PEcAn.

Model Name	Available in the VM	Prescribed Inputs	Input Functions/Values	Restart Function
BioCro	Yes	Yes	Yes	No
CLM	No	No	No	No
DALEC	Yes	Yes	Yes	No
ED	Yes	Yes	Yes	No
FATES	No	Yes		No
GDAY	No	No	No	No
LINKAGES	Yes	Yes	Yes	Yes
LPJ-GUESS	Yes	Yes	No	No
MAESPA	Yes	Yes	No	No
PRELES	Yes	Yes	Partially	No
Sipnet	Yes	Yes	Yes	No

Output Variables

PEcAn converts all model outputs to a single standard. This standard evolved out of MsTMIP project, which is itself based on NACP, LBA, and other model-intercomparison projects. This standard was expanded for the PalEON MIP and the needs of the PEcAn modeling community to support variables not in these standards.

Model developers: do not add variables to your PEcAn output without first adding them to the PEcAn standard table! Also, do not create new variables equivalent to existing variables but just with different names or units.

29.1 PRELES

Model Information
Home Page
Source Code
License
Authors
PEcAn Integration

Introduction

Introduction about model

PEcAn configuration file additions

Should list the model specific additions to the PEcAn file here

Model specific input files

List of inputs required by model, such as met, etc.

Model configuration files

MODEL is configured using 3 files which are placed in the run folder, as well as a symbolic link to the met file.

• file1 : template for this file is located at models/MODEL/inst/file1 and is not modified.
  
• file2 : template for this file is located at models/MODEL/inst/file2 and is not modified.
  
• file3 : template for this file is in models/MODEL/inst/file3 or it is specified in the <model> section as <template>. The values in this template are replaced by those computed in the earlier stages of PEcAN.

Installation notes

This section contains notes on how to compile the model. The notes for the VM might work on other machines or configurations as well.

VM

29.2 SIPNET configuration

SIPNET is configured using 3 files which are placed in the run folder, as well as a symbolic link to the met file.

• sipnet.in : template for this file is located at models/sipnet/inst/sipnet.in and is not modified.
  
• sipnet.param-spatial : template for this file is located at models/sipnet/inst/template.param-spatial and is not modified.
  
• sipnet.param : template for this file is in models/sipnet/inst/template.param or it is specified in the <model> section as <default.param>. The values in this template are replaced by those computed in the earlier stages of PEcAN.

29.3 Sipnet

Model Information
Home Page
Source Code
License
Authors
PEcAn Integration	Michael Dietze, Rob Kooper

Introduction

Introduction about model

PEcAn configuration file additions

Should list the model specific additions to the PEcAn file here

Model specific input files

List of inputs required by model, such as met, etc.

Model configuration files

SIPNET is configured using 3 files which are placed in the run folder, as well as a symbolic link to the met file.

• sipnet.in : template for this file is located at models/sipnet/inst/sipnet.in and is not modified.
  
• sipnet.param-spatial : template for this file is located at models/sipnet/inst/template.param-spatial and is not modified.
  
• sipnet.param : template for this file is in models/sipnet/inst/template.param or it is specified in the <model> section as <default.param>. The values in this template are replaced by those computed in the earlier stages of PEcAN.

Installation notes

This section contains notes on how to compile the model. The notes for the VM might work on other machines or configurations as well.

SIPNET version unk:

if [ ! -e ${HOME}/sipnet_unk ]; then
  cd
  curl -o sipnet_unk.tar.gz http://isda.ncsa.illinois.edu/~kooper/PEcAn/models/sipnet_unk.tar.gz
  tar zxf sipnet_unk.tar.gz
  rm sipnet_unk.tar.gz
fi
cd ${HOME}/sipnet_unk/
make clean
make
sudo cp sipnet /usr/local/bin/sipnet.runk
make clean

SIPNET version 136:

if [ ! -e ${HOME}/sipnet_r136 ]; then
  cd
  curl -o sipnet_r136.tar.gz http://isda.ncsa.illinois.edu/~kooper/EBI/sipnet_r136.tar.gz
  tar zxf sipnet_r136.tar.gz
  rm sipnet_r136.tar.gz
  sed -i 's#$(LD) $(LIBLINKS) \(.*\)#$(LD) \1 $(LIBLINKS)#' ${HOME}/sipnet_r136/Makefile
fi
cd ${HOME}/sipnet_r136/
make clean
make
sudo cp sipnet /usr/local/bin/sipnet.r136
make clean

VM