Package index
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Analysis.sda() - Analysis.sda
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Construct_H() - Construc_H
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Construct.H.multisite() - Construct.H.multisite
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Construct.R() - Construct.R
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Contruct.Pf() - Contruct.Pf
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Create_Site_PFT_CSV() - Title Identify pft for each site of a multi-site settings using NLCD and Eco-region
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EnKF.MultiSite() - EnKF.MultiSite
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EnKF() - EnKF
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GEF.MultiSite.Nimble - multisite TWEnF
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GEF()GEF.MultiSite() - GEF
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GrabFillMatrix() - GrabFillMatrix
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Local.support() - Local.support
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MCMC_Init() - MCMC_Init
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MCMC_block_function() - MCMC_block_function
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MCMC_function() - MCMC_function
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Obs.data.prepare.MultiSite() - Obs.data.prepare.MultiSite
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Prep_OBS_SDA() - SDA observation preparation function for LAI and AGB
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Remote_Sync_launcher() - Remote_Sync_launcher
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SDA_OBS_Assembler() - Assembler for preparing obs.mean and obs.cov for the SDA workflow
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SDA_control() - SDA_control
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SDA_downscale() - SDA Downscale Function
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SDA_downscale_hrly() - SDA Downscale Function for Hourly Data
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SDA_downscale_metrics() - Calculate Metrics for Downscaling Results
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SDA_downscale_preprocess() - Preprocess Data for Downscaling
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SDA_remote_launcher() - SDA_remote_launcher
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adj.ens() - adj.ens
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aggregate() - Aggregation Function
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alltocs() - alltocs
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alr() - Additive Log Ratio transform
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analysis_sda_block() - analysis_sda_block
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assessParams() - assess.params
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block.2.vector() - block.2.vector
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block_matrix() - block_matrix
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build.block.xy() - build.block.xy
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build_X() - build_X
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conj_wt_wishart_sampler() - Weighted conjugate wishart
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construct_nimble_H() - construct_nimble_H
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downscale_main() - downscale_main
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downscale_qsub_main() - downscale_qsub_main
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dwtmnorm() - weighted multivariate normal density
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get_ensemble_weights() - get_ensemble_weights
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hop_test() - hop_test
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interactive.plotting.sda()postana.timeser.plotting.sda()postana.bias.plotting.sda()postana.bias.plotting.sda.corr()post.analysis.ggplot()post.analysis.ggplot.violin()post.analysis.multisite.ggplot()SDA_timeseries_plot() - Internal functions for plotting SDA outputs. Interactive, post analysis time-series and bias plots in base plotting system and ggplot
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inv.alr() - inverse of ALR transform
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load_data_paleon_sda() - load_data_paleon_sda
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y_star_create() - load_nimble
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matrix_network() - matrix_network
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metSplit() - metSplit
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obs_timestep2timepoint() - convert from timestep to actual time points. supports year, month, week, and day as time unit.
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outlier.detector.boxplot() - outlier.detector.boxplot
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parallel_prediction() - parallel_prediction
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parallel_train() - parallel_train
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pecan_settings_2_pts() - pecan_settings_2_pts
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piecew.poly.local() - piecew.poly.local
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prepare_train_dat() - prepare_train_dat
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qsub_sda() - qsub_sda
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qsub_sda_batch() - qsub_sda_batch
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rescaling_stateVars() - rescaling_stateVars
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rwtmnorm() - random weighted multivariate normal
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sample.parameters() - sample parameters
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sample_met() - Sample meteorological ensembles
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sampler_toggle() - sampler toggling
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sda.enkf() - State Variable Data Assimilation: Ensemble Kalman Filter and Generalized ensemble filter
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sda.enkf.multisite() - State Variable Data Assimilation: Ensemble Kalman Filter and Generalized ensemble filter
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sda.enkf.original() - State Variable Data Assimilation: Ensemble Kalman Filter
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sda.enkf_local() - sda.enkf_local
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sda_assemble() - sda_assemble
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sda_matchparam() - sda_matchparam
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sda_weights_site() - Calculate ensemble weights for each site at time t.
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simple.local() - simple.local
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stack_covariates_2_df() - stack_covariates_2_df
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stack_covariates_2_geotiff() - stack_covariates_2_geotiff
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tobit.model - TWEnF
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tobit2space.model - Fit tobit prior to ensemble members
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tobit_model_censored() - tobit_model_censored
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update_q() - update_q