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Changelog

Source: NEWS.md

PEcAn.workflow 1.10.0.9000

Changed

  • Sensitivity analysis and ensemble runs now generate separate input design matrices with appropriate dimensions, fixing dimension mismatch errors in multisite workflows. (#3708)
  • Generated runs are now stored in a runs_manifest.csv file in the output directory instead of modifying samples.Rdata (#3708)
  • Removed tests/Rcheck_reference.log, which was used to ignore historic check messages that have now been fixed.

PEcAn.workflow 1.10.0

Changed

Breaking: Ensemble runs now use shared input samples across all sites instead of independent sampling per site.

  • run.write.configs() now has two new required args ensemble.size and input_design, and removes ens.sample.method (#3535, #3612).
  • runModule.run.write.configs() has new arg input_design, with default NULL meaning to generate one internally (#3535).
  • Removed unused functions create_execute_test_xml() and model_specific_tags(), which depended on deprecated database and web frontend (@S1DDHEY, #3826).

PEcAn.workflow 1.9.0

  • PEcAn.workflow is now distributed under the BSD 3-clause license instead of the NCSA Open Source license.
  • It is now easier to run a workflow without a connection to the PEcAn database by setting settings$database$bety$write to FALSE (or undefining it entirely), at the obvious cost that runs set up this way are not recorded in the database (@yinghaoSunn, #3398).
  • Improved handling of modellauncher in start_model_runs(), including some support for array runs via settings like <qsub.extra>-t 1-@NJOBS@</qsub.extra>.

PEcAn.workflow 1.8.0

  • New functions start_model_runs and runModule_start_model_runs, both moved from package PEcAn.remote (where they were start.model.runs and runModule.start.model.runs). They kick off the model runs you set up earlier in the workflow and handle the details of local or remote execution.

PEcAn.workflow 1.7.1