Changelog • PEcAn.uncertainty

PEcAn.uncertainty 1.9.0.9000

run.ensemble.analysis() now respects settings$modeloutdir rather than assuming an out/ folder inside settings$outdir (@Akash-paluvai, #3722).

PEcAn.uncertainty is now distributed under the BSD 3-clause license instead of the NCSA Open Source license.

Added the shared input_design matrix, generated via new funtion generate_joint_ensemble_design(), keeps parameter draws and sampled inputs aligned across run.write.configs(), write.ensemble.configs(), and write.sa.configs(). (@blesson-07, #3535, #3677).
New function compute_sobol_indices for use in global sensitivity analyses (@blesson-07, #3612).

Breaking: write.ensemble.configs gains new mandatory arguments input_design and ensemble.size, and removes argument samples. Note that input_design and ensemble.size are added to the beginning of the argument list, so calls passing defaults unnamed as the first arg will break (#3612, #3634).
Breaking: input.ens.gen gains new mandatory argument ensemble_size, added between the existing settings and input args.
Plotting sensitivity now makes less noise in the console and once again produces a one-page PDF as intended (#3560).
write.ensemble.configs and write.sa.configs now generate an ensemble id if one is not provided in a DB-free run (#3654). Runs with DB continue to always generate a new id. Note that multi-site runs with no id provided will now get a separate ensemble ID (and thus generate separate analyses) for each site.
Documented that runModule.run.sensitivity.analysis does not yet work with multisite settings. This will be fixed in a future release.
The default sampling method of get.ensemble.samples has changed from “uniform” to “random” (#3535).

write.ensemble.configs now respects argument write.to.db when settings $database$ bety $write is NULL (but if settings$ database $bety$ write is set, it still overrides write.to.db).
Roxygen fixes

Added an optional pfts argument to run.sensitivity.analysis() so that sensitivity analysis and variance decomposition can be run on a subset of PFTs defined in settings if desired (#3155).