Package index
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add_workflow_info() - Add workflow specific info to settings list for benchmarking
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align_by_first_observation() - align_first_observation
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align_data() - Align timeseries data
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align_data_to_data_pft() - align_data_to_data_pft
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align_pft() - Align vectors of Plant Functional Type and species.
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bm_settings2pecan_settings() - Move benchmarking settings back in to original pecan settings object
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calc_benchmark() - Calculate benchmarking statistics
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calc_metrics() - calc_metrics
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check_BRR() - Check whether a run has been registered as a reference run in BETY
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check_if_legal_table() - check_if_legal_table
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check_if_list_of_pfts() - check_if_list_of_pfts
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check_if_species_list() - check_if_species_list
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clean_settings_BRR() - Cleans PEcAn settings file and prepares the settings to be saved in a reference run record in BETY
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create_BRR() - Create benchmark reference run and ensemble
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define_benchmark() - Benchmark Definition: Retrieve or Create Bety Benchmarking Records
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format_wide2long() - Function to convert wide format to long format
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get_species_list_standard() - get_species_list_standard
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load_csv() - load_csv
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load_data() - load data
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load_rds() - load_rds
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load_tab_separated_values() - Load files with mime-type 'text/tab-separated-values'
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load_x_netcdf() - Load from netCDF
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match_timestep() - Match time step
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mean_over_larger_timestep() - Calculate benchmarking statistics
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metric_AME() - Absolute Maximum Error
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metric_Frechet() - Frechet Distance
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metric_MAE() - Mean Absolute Error
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metric_MSE() - Mean Square Error
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metric_PPMC() - Pearson Product Moment Correlation
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metric_R2() - Coefficient of Determination (R2)
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metric_RAE() - Relative Absolute Error
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metric_RMSE() - Root Mean Square Error
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metric_cor() - Correlation Coefficient
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metric_lmDiag_plot() - Linear Regression Diagnostic Plot
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metric_residual_plot() - Residual Plot
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metric_run() - Model Run Check
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metric_scatter_plot() - Scatter Plot
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metric_timeseries_plot() - Timeseries Plot
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read_settings_BRR() - Read settings from database using reference run id