Package index • PEcAn.ED2

All functions

SAS.ED2(): Use semi-analytic solution to accelerate model spinup

SAS.ED2.param.Args(): sets parameters and defaults for the ED2 semi-analytical spin-up

between(): Check if value is between (inclusive) a range

check_css() check_pss() check_site(): Check individual ED input files

check_ed2in(): Check ED2IN

check_ed_metfile(): Check individual ED metfile

check_ed_metheader() check_ed_metheader_format(): Check ED met header object

convert.samples.ED(): Convert parameters from PEcAn database default units to ED defaults

create_css() create_pss() create_site(): Create css, pss, and site files from examples

create_ed_veg(): Create full ED vegetation input object

dates_in_month(): Get all the dates in a month

download_edi(): Download ED inputs

ed.var(): Lookup function for translating commonly used ED variables returns out list, readvar variables to read from file, expr if any derivation is needed

ed2in2time(): Convert ED2IN ITIMEA/Z string to hour and minute

example_css example_pss example_site: Example css, pss, and site objects

extract_pfts(): Extract pft numbers from settings$pfts

get_configxml.ED2(): Get ED2 config.xml file

get_ed2in_dates(): Extract sequence of dates from ED2IN file

get_latlon(): Parse latitude or longitude

get_met_dates(): Get meteorology dates

get_restartfile.ED2(): Get ED history restart file path

is.ed2in(): Check if object is ed2in

list.files.nodir(): List only files in a directory

met2model.ED2(): met2model wrapper for ED2

met_flag_description: Description of meteorology flags

met_variable_description: Description of meteorology variables

model2netcdf.ED2(): Code to convert ED2's -T- HDF5 output into netCDF format

modify_df(): Modify a reference data.frame

modify_ed2in(): Modify an ED2IN object

parse.history(): Create a CSV from history.xml outputed by ED

patch_cohort_index(): Generate ED2 cohort to patch mapping vector

pftmapping: Mapping of PEcAn PFT names to ED2 PFT numbers

prepare_ed_veg_filename(): Format file name for ED vegetation inputs

print(<ed2in>): Print method for ed2in

put_E_values(): Put -E- values to nc_var list

put_T_values(): Function for put -T- values to nc_var list

read_E_files(): Function for reading -E- files

read_S_files(): Read "S" files output by ED2

read_T_files(): Function for reading -T- files

read_css() read_pss() read_site(): Read individual css, pss, and site files

read_ed2in(): Read ED2IN file to named list

read_ed_metheader(): Read ED meteorology header file

read_ed_veg(): Read ED2 vegetation inputs

read_restart.ED2(): State data assimilation read-restart for ED2

remove.config.ED2(): Clear out old config and ED model run files.

run_ed_singularity(): Run ED singularity container

tags2char(): Format ED2IN tag-value list

translate_vars_ed(): Function translating pecan vars to ED vars

veg2model.ED2(): Writes ED specific IC files

write.config.ED2(): Write ED configuration files

write.config.jobsh.ED2(): Write ED2 job.sh file

write.config.xml.ED2(): Write ED2 config.xml file

write_css() write_pss() write_site(): Write individual ED inputs

write_ed2in(): Write ED2IN list to file

write_ed_metheader(): Write ED meteorlogy header

write_ed_veg(): Write ED inputs to directory

write_restart.ED2(): Write ED2 restart file from SDA results

zz.imports: Imports from other packages