put_veg_module.RdMatch species to PFTs + veg2model module
put_veg_module(getveg.id, dbparms, input_veg, pfts, outfolder, n.ensemble, dir, machine, model, start_date, end_date, new_site, host, overwrite)
| getveg.id | list, input.id and dbfile.id of the IC file in intermediate pecan standard |
|---|---|
| dbparms | list, settings$database info reqired for opening a connection to DB |
| input_veg | list, this is a sublist of settings$run$inputs that has info about source, id, metadata of the requested IC file |
| pfts | list, same as settings$pfts |
| outfolder | path to where the processed files will be written |
| n.ensemble | integer, ensemble member number |
| dir | dir path to dbfiles on local machine |
| machine | data frame, DB info regarding localhost machine id/hostname etc. |
| model | model name, e.g. "ED2" |
| start_date | date in "YYYY-MM-DD" format, in case of source==FIA it's the settings$run$start.date, otherwise start_date of the IC file in DB |
| end_date | date in "YYYY-MM-DD" format, in case of source==FIA it's the settings$run$end.date, otherwise end_date of the IC file in DB |
| new_site | data frame, id/lat/lon/name info about the site |
| host | list, host info as in settings$host, host$name forced to be "localhost" upstream |
| overwrite | logical flag for convert.input |