InventoryGrowthFusion.Rdthis code fuses forest inventory data with tree growth data (tree ring or dendrometer band) for the same plots. Code is a rewrite of Clark et al 2007 Ecol Appl into JAGS
InventoryGrowthFusion(data, cov.data = NULL, time_data = NULL, n.iter = 5000, n.chunk = n.iter, n.burn = min(n.chunk, 2000), random = NULL, fixed = NULL, time_varying = NULL, burnin_plot = FALSE, save.jags = "IGF.txt", z0 = NULL, save.state = TRUE, restart = NULL)
| data | list of data inputs |
|---|---|
| n.chunk | number of MCMC steps to evaluate at a time. Will only return LAST. If restarting, second number in vector is chunk to start from |
| n.burn | number of steps to automatically discard as burn-in |
| random | = whether or not to include random effects |
| save.state | whether or not to include inferred DBH in output (can be large). Enter numeric value to save.state periodically (in terms of n.chunk) |
| restart | final mcmc.list from previous execution. NULL for new run. TRUE to save final state for new run. |
an mcmc.list object
Requires JAGS