met2CF.csv.Rd
met2CF.csv
met2CF.csv(in.path, in.prefix, outfolder, start_date, end_date, format, lat = NULL, lon = NULL, nc_verbose = FALSE, overwrite = FALSE, ...)
format | data frame or list with elements as described below
format is output from db/R/query.format.vars, and should have:
REQUIRED:
format$lat = latitude of site (unless passed by lat)
format$lon = longitude of site (unless passed by lon)
format$header = number of lines of header
format$vars is a data.frame with lists of information for each variable to read, at least airT is required
format$vars$input_name = Name in CSV file
format$vars$input_units = Units in CSV file
format$vars$bety_name = Name in BETY - see https://pecan.gitbooks.io/pecan-documentation/content/developers_guide/Adding-an-Input-Converter.html for allowable ones
OPTIONAL:
format$na.strings = list of missing values to convert to NA, such as -9999
format$skip = lines to skip excluding header
format$vars$column_number = Column number in CSV file (optional, will use header name first)
Columns with NA for bety variable name are dropped.
Units for datetime field are the lubridate function that will be used to parse the date (e.g. |
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nc_verbose | logical: run ncvar_add in verbose mode? |
# NOT RUN { bety <- list(user='bety', password='bety', host='localhost', dbname='bety', driver='PostgreSQL',write=TRUE) con <- PEcAn.DB::db.open(bety) bety$con <- con start_date <- lubridate::ymd_hm('200401010000') end_date <- lubridate::ymd_hm('200412312330') file<-PEcAn.data.atmosphere::download.Fluxnet2015('US-WCr','~/',start_date,end_date) in.path <- '~/' in.prefix <- file$dbfile.name outfolder <- '~/' format.id <- 5000000001 format <- PEcAn.DB::query.format.vars(format.id=format.id,bety = bety) format$lon <- -92.0 format$lat <- 45.0 format$time_zone <- "America/Chicago" results <- PEcAn.data.atmosphere::met2CF.csv( in.path, in.prefix, outfolder, start_date, end_date, format, overwrite=TRUE) # }