All functions

AirDens()

Air Density

align.met()

align.met

browndog.met()

get met data from browndog

build_cf_variables_table_url()

Construct a URL to a specific version of the CF variables table XML

cfmet.downscale.daily()

daily to subdaily downscaling

cfmet.downscale.subdaily()

subdaily downscaling

cfmet.downscale.time()

Downscale CF met data

check_met_input_file()

Check a meteorology data file for compliance with the PEcAn standard

check_unit()

Check that the unit of a variable in a NetCDF file is equivalent to the expected unit.

closest_xy()

closest_xy

col2ncvar()

Create `ncvar` object from variable name

cos_solar_zenith_angle()

Cosine of solar zenith angle

daygroup()

Assign daygroup tag for a given date

db.site.lat.lon()

db.site.lat.lon

debias.met.regression()

debias.met.regression

debias.met()

debias_met

download.Ameriflux()

download.Ameriflux

download.AmerifluxLBL()

Download Ameriflux LBL CSV files

download.CRUNCEP()

Download CRUNCEP data

download.FACE()

download.FACE

download.Fluxnet2015()

download.Fluxnet2015

download.FluxnetLaThuile()

download.FluxnetLaThuile

download.GFDL()

Download GFDL CMIP5 outputs for a single grid point using OPeNDAP and convert to CF

download.GLDAS()

Download GLDAS data

download.Geostreams()

Download Geostreams data from Clowder API

download.MACA()

download.MACA

download.MsTMIP_NARR()

download.MsTMIP_NARR

download.NARR()

Download NARR files

download.NARR_site()

Download NARR time series for a single site

download.NEONmet()

Download NEON Site Met CSV files

download.NLDAS()

Download NLDAS met data

download.NOAA_GEFS()

Download NOAA GEFS Weather Data

download.PalEON()

download.PalEON

download.PalEON_ENS()

Download PalEON met ensemble files

download.US_WCr()

download.US-WCr

equation_of_time()

Equation of time: Eccentricity and obliquity

exner()

Exner function

extract.local.CMIP5()

extract.local.CMIP5

extract.local.NLDAS()

extract.local.NLDAS

extract.nc()

extract.nc

gen.subdaily.models()

gen.subdaily.models

generate_narr_url()

Generate NARR url from a vector of dates

get.es()

get es

get.lv()

Latent heat of vaporization

get.ncvector()

Get time series vector from netCDF file

get.rh()

get RH

get.vpd()

VPD

get_NARR_thredds()

Retrieve NARR data using thredds

get_cf_variables_table()

Retrieve the current CF variables table from cfconventions.org and convert it into a data.frame

get_clowderauth()

Authentication lookup helper

get_narr_url()

Retrieve NARR data from a given URL

latlon2lcc()

Convert latitude and longitude to x-y coordinates (in km) in Lambert conformal conic projection (used by NARR)

latlon2narr()

Convert latitude and longitude coordinates to NARR indices

lightME()

Simulates the light macro environment

lm_ensemble_sims()

lm_ensemble_sims

load.cfmet()

load CF met

merge_met_variable()

Merge a new met variable from an external file (e.g. CO2) into existing met files

met.process()

met.process

met.process.stage()

met.process.stage

met2CF.ALMA()

met2CF.ALMA

met2CF.Ameriflux()

met2CF.Ameriflux

met2CF.AmerifluxLBL()

met2CF.AmerifluxLBL

met2CF.FACE()

convert FACE files to CF files

met2CF.Geostreams()

Convert geostreams JSON to CF met file

met2CF.NARR()

met2CF.NARR

met2CF.PalEON()

met2CF.PalEON

met2CF.PalEONregional() met2CF.PalEONregional()

met2CF.PalEONregional

met2CF.csv()

met2CF.csv

met_temporal_downscale.Gaussian_ensemble()

met_temporal_downscale.Gaussian_ensemble

metgapfill.NOAA_GEFS()

Gapfill NOAA_GEFS weather data

metgapfill()

Take an Ameriflux NetCDF file Fill missing met values using MDS approach using MPI-BGC REddyProc library Currently Future version: Choose which variables to gap fill Future version will first downscale and fill with NARR, then REddyProc

model.train()

model.train

narr_flx_vars narr_sfc_vars narr_all_vars

NARR flux and sfc variables

nc.merge()

nc.merge

par2ppfd()

par2ppfd

pecan_standard_met_table

Conversion table for PEcAn standard meteorology

permute.nc()

permute.nc

post_process()

Post process raw NARR downloaded data frame

predict_subdaily_met()

predict_subdaily_met

prepare_narr_year()

Write NetCDF file for a single year of data

qair2rh()

qair2rh

read.register()

read.register

read_narr_var()

Read a specific variable from a NARR NetCDF file

rh2qair()

RH to SH

robustly()

Adverb to try calling a function `n` times before giving up

save.betas()

save.betas

save.model()

save.model

site.lst()

site.lst

site_from_tag()

site_from_tag

solarMJ2ppfd()

MJ to PPFD

spin.met()

Spin-up meteorology

split_wind()

Split wind_speed into eastward_wind and northward_wind

step_means()

take mean at fixed intervals along a vector

subdaily_pred()

subdaily_pred

sw2par()

SW to PAR

sw2ppfd()

SW to PPFD

temporal.downscale.functions()

temporal_downscale_functions

upscale_met()

upscale_met

wide2long()

Wide to Long