S-file contents are not written to standard netcdfs but are used by read_restart from SDA's perspective it doesn't make sense to write and read to ncdfs because ED restarts from history files

S-file contents are not written to standard netcdfs but are used by read_restart from SDA's perspective it doesn't make sense to write and read to ncdfs because ED restarts from history files

read_S_files(sfile, outdir, pft_names, pecan_names = NULL)

Arguments

sfile	history file name e.g. "history-S-1961-01-01-000000-g01.h5"
outdir	path to run outdir, where the -S- file is
pft_names	string vector, names of ED2 pfts in the run, e.g. c("temperate.Early_Hardwood", "temperate.Late_Conifer")
pecan_names	string vector, pecan names of requested variables, e.g. c("AGB", "AbvGrndWood")