All functions
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between()
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Check if value is between (inclusive) a range |
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check_css() check_pss() check_site()
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Check individual ED input files |
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check_ed2in()
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Check ED2IN |
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check_ed_metfile()
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Check individual ED metfile |
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check_ed_metheader() check_ed_metheader_format()
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Check ED met header object |
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convert.samples.ED()
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convert parameters from PEcAn database default units to ED defaults |
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create_css() create_pss() create_site()
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Create css, pss, and site files from examples |
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create_ed_veg()
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Create full ED vegetation input object |
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dates_in_month()
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Get all the dates in a month |
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download_edi()
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Download ED inputs |
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ed.var()
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Lookup function for translating commonly used ED variables
returns out list, readvar variables to read from file, expr if any derivation is needed |
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ed2in2time()
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Convert ED2IN ITIMEA/Z string to hour and minute |
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example_css example_pss example_site
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Example css, pss, and site objects |
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get.model.output.ED2()
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Retrieve ED2 HDF model output from local or remote server |
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get_configxml.ED2()
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Get ED2 config.xml file |
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get_ed2in_dates()
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Extract sequence of dates from ED2IN file |
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get_latlon()
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Parse latitude or longitude |
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get_met_dates()
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Get meteorology dates |
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get_restartfile.ED2()
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Get ED history restart file path |
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is.ed2in()
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Check if object is ed2in |
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list.files.nodir()
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List only files in a directory |
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met2model.ED2()
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met2model wrapper for ED2 |
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met_flag_description
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Description of meteorology flags |
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met_variable_description
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Description of meteorology variables |
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model2netcdf.ED2()
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Code to convert ED2's -T- HDF5 output into netCDF format |
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modify_df()
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Modify a reference data.frame |
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modify_ed2in()
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Modify an ED2IN object |
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parse.history()
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Create a CSV from history.xml outputed by ED |
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patch_cohort_index()
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Generate ED2 cohort to patch mapping vector |
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prepare_ed_veg_filename()
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Format file name for ED vegetation inputs |
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print(<ed2in>)
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Print method for ed2in |
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put_E_values()
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Function for put -E- values to nc_var list |
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put_T_values()
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Function for put -T- values to nc_var list |
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read.output.ED2()
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Read ED output |
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read.output.file.ed()
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read output - ED |
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read_E_files()
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Function for reading -E- files |
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read_S_files()
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S-file contents are not written to standard netcdfs but are used by read_restart
from SDA's perspective it doesn't make sense to write and read to ncdfs because ED restarts from history files |
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read_T_files()
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Function for reading -T- files |
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read_css() read_pss() read_site()
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Read individual css, pss, and site files |
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read_ed2in()
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Read ED2IN file to named list |
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read_ed_metheader()
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Read ED meteorology header file |
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read_ed_veg()
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Read ED2 vegetation inputs |
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read_restart.ED2()
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State data assimilation read-restart for ED2 |
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remove.config.ED2()
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Clear out old config and ED model run files. |
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run_ed_singularity()
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Run ED singularity container |
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tags2char()
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Format ED2IN tag-value list |
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translate_vars_ed()
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Function translating pecan vars to ED vars
var.names <- c("DBH", "AGB", "AbvGrndWood") |
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veg2model.ED2()
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Writes ED specific IC files |
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write.config.ED2()
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Write ED configuration files |
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write.config.jobsh.ED2()
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Write ED2 config.xml file |
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write.config.xml.ED2()
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Write ED2 config.xml file |
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write_css() write_pss() write_site()
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Write individual ED inputs |
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write_ed2in()
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Write ED2IN list to file |
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write_ed_metheader()
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Write ED meteorlogy header |
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write_ed_veg()
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Write ED inputs to directory |
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write_restart.ED2()
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Write ED2 restart file from SDA results |
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zz.imports
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Imports from other packages |