burnin.thin.Rd
Burn-in and thinning of MCMC samples
burnin.thin(samples, target = 5000, burnin.ratio = 2, auto = TRUE, burnin = NULL, thin = NULL)
samples | Matrix of MCMC samples |
---|---|
target | Target number of samples (default = 5000). Only applicable if auto=TRUE. |
burnin.ratio | Fraction of samples to burn-in; i.e. 2 means to remove first 1/2 of samples, 3 means 1/3, etc. (default = 2). Only applicable if auto=TRUE. |
auto | Whether or not to perform automatic burnin and thin based on target number of samples. |
burnin | Number of samples to discard as burnin (auto must be FALSE) |
thin | Thinning interval (auto must be FALSE) |