pecan.ma.summary.Rd
Generate summary statistics and diagnostics for PEcAn meta.analysis
pecan.ma.summary(mcmc.object, pft, outdir, threshold = 1.2, gg = FALSE)
mcmc.object | JAGS mcmc output from |
---|---|
pft | plant functional type |
outdir | output directory |
threshold | Gelman-Rubin convergence diagnostic (MGPRF) default = 1.2 following Bolker 2008 Ecological Models and Data in R |
gg | produce extra diagnostic plots using the "ggmcmc" package? Caution: very slow! |
# NOT RUN { summary <- pecan.ma.summary( trait.mcmc, settings$pfts$pft, settings$outdir, settings$meta.analysis$threshold) # }