All functions
|
AirDens()
|
Air Density |
align.met()
|
align.met |
browndog.met()
|
get met data from browndog |
build_cf_variables_table_url()
|
Construct a URL to a specific version of the CF variables table XML |
cfmet.downscale.daily()
|
daily to subdaily downscaling |
cfmet.downscale.subdaily()
|
subdaily downscaling |
cfmet.downscale.time()
|
Downscale CF met data |
check_met_input_file()
|
Check a meteorology data file for compliance with the PEcAn standard |
check_unit()
|
Check that the unit of a variable in a NetCDF file is equivalent to
the expected unit. |
closest_xy()
|
closest_xy |
col2ncvar()
|
Create `ncvar` object from variable name |
cos_solar_zenith_angle()
|
Cosine of solar zenith angle |
daygroup()
|
Assign daygroup tag for a given date |
db.site.lat.lon()
|
db.site.lat.lon |
debias.met.regression()
|
debias.met.regression |
debias.met()
|
debias_met |
download.Ameriflux()
|
download.Ameriflux |
download.AmerifluxLBL()
|
Download Ameriflux LBL CSV files |
download.CRUNCEP()
|
Download CRUNCEP data |
download.FACE()
|
download.FACE |
download.Fluxnet2015()
|
download.Fluxnet2015 |
download.FluxnetLaThuile()
|
download.FluxnetLaThuile |
download.GFDL()
|
Download GFDL CMIP5 outputs for a single grid point using OPeNDAP and convert to CF |
download.GLDAS()
|
Download GLDAS data |
download.Geostreams()
|
Download Geostreams data from Clowder API |
download.MACA()
|
download.MACA |
download.MsTMIP_NARR()
|
download.MsTMIP_NARR |
download.NARR()
|
Download NARR files |
download.NARR_site()
|
Download NARR time series for a single site |
download.NEONmet()
|
Download NEON Site Met CSV files |
download.NLDAS()
|
Download NLDAS met data |
download.NOAA_GEFS()
|
Download NOAA GEFS Weather Data |
download.PalEON()
|
download.PalEON |
download.PalEON_ENS()
|
Download PalEON met ensemble files |
download.US_WCr()
|
download.US-WCr |
equation_of_time()
|
Equation of time: Eccentricity and obliquity |
exner()
|
Exner function |
extract.local.CMIP5()
|
extract.local.CMIP5 |
extract.local.NLDAS()
|
extract.local.NLDAS |
extract.nc()
|
extract.nc |
gen.subdaily.models()
|
gen.subdaily.models |
generate_narr_url()
|
Generate NARR url from a vector of dates |
get.es()
|
get es |
get.lv()
|
Latent heat of vaporization |
get.ncvector()
|
Get time series vector from netCDF file |
get.rh()
|
get RH |
get.vpd()
|
VPD |
get_NARR_thredds()
|
Retrieve NARR data using thredds |
get_cf_variables_table()
|
Retrieve the current CF variables table from cfconventions.org
and convert it into a data.frame |
get_clowderauth()
|
Authentication lookup helper |
get_narr_url()
|
Retrieve NARR data from a given URL |
latlon2lcc()
|
Convert latitude and longitude to x-y coordinates (in km) in Lambert
conformal conic projection (used by NARR) |
latlon2narr()
|
Convert latitude and longitude coordinates to NARR indices |
lightME()
|
Simulates the light macro environment |
lm_ensemble_sims()
|
lm_ensemble_sims |
load.cfmet()
|
load CF met |
merge_met_variable()
|
Merge a new met variable from an external file (e.g. CO2) into existing met files |
met.process()
|
met.process |
met.process.stage()
|
met.process.stage |
met2CF.ALMA()
|
met2CF.ALMA |
met2CF.Ameriflux()
|
met2CF.Ameriflux |
met2CF.AmerifluxLBL()
|
met2CF.AmerifluxLBL |
met2CF.FACE()
|
convert FACE files to CF files |
met2CF.Geostreams()
|
Convert geostreams JSON to CF met file |
met2CF.NARR()
|
met2CF.NARR |
met2CF.PalEON()
|
met2CF.PalEON |
met2CF.PalEONregional() met2CF.PalEONregional()
|
met2CF.PalEONregional |
met2CF.csv()
|
met2CF.csv |
met_temporal_downscale.Gaussian_ensemble()
|
met_temporal_downscale.Gaussian_ensemble |
metgapfill.NOAA_GEFS()
|
Gapfill NOAA_GEFS weather data |
metgapfill()
|
Take an Ameriflux NetCDF file
Fill missing met values using MDS approach using MPI-BGC REddyProc library
Currently
Future version: Choose which variables to gap fill
Future version will first downscale and fill with NARR, then REddyProc |
model.train()
|
model.train |
narr_flx_vars narr_sfc_vars narr_all_vars
|
NARR flux and sfc variables |
nc.merge()
|
nc.merge |
par2ppfd()
|
par2ppfd |
pecan_standard_met_table
|
Conversion table for PEcAn standard meteorology |
permute.nc()
|
permute.nc |
post_process()
|
Post process raw NARR downloaded data frame |
predict_subdaily_met()
|
predict_subdaily_met |
prepare_narr_year()
|
Write NetCDF file for a single year of data |
qair2rh()
|
qair2rh |
read.register()
|
read.register |
read_narr_var()
|
Read a specific variable from a NARR NetCDF file |
rh2qair()
|
RH to SH |
robustly()
|
Adverb to try calling a function `n` times before giving up |
save.betas()
|
save.betas |
save.model()
|
save.model |
site.lst()
|
site.lst |
site_from_tag()
|
site_from_tag |
solarMJ2ppfd()
|
MJ to PPFD |
spin.met()
|
Spin-up meteorology |
split_wind()
|
Split wind_speed into eastward_wind and northward_wind |
step_means()
|
take mean at fixed intervals along a vector |
subdaily_pred()
|
subdaily_pred |
sw2par()
|
SW to PAR |
sw2ppfd()
|
SW to PPFD |
temporal.downscale.functions()
|
temporal_downscale_functions |
upscale_met()
|
upscale_met |
wide2long()
|
Wide to Long |