All functions
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add_workflow_info()
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Add workflow specific info to settings list for benchmarking |
align_by_first_observation()
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align_first_observation |
align_data()
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Align timeseries data |
align_data_to_data_pft()
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align_data_to_data_pft |
align_pft()
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align_pft |
bm_settings2pecan_settings()
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Move benchmarking settings back in to original pecan settings object |
calc_benchmark()
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Calculate benchmarking statistics |
calc_metrics()
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calc_metrics |
check_BRR()
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Check whether a run has been registered as a reference run in BETY |
check_if_legal_table()
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check_if_legal_table |
check_if_list_of_pfts()
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check_if_list_of_pfts |
check_if_species_list()
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check_if_species_list |
clean_settings_BRR()
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Cleans PEcAn settings file and prepares the settings to be saved in a reference run record in BETY |
create_BRR()
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Create benchmark reference run and ensemble |
define_benchmark()
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Benchmark Definition: Retrieve or Create Bety Benchmarking Records |
format_wide2long()
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format_wide2long |
get_species_list_standard()
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get_species_list_standard |
load_csv()
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load_csv |
load_data()
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load_data |
load_rds()
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load_rds |
load_tab_separated_values()
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load_tab_separated_values |
load_x_netcdf()
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load_x_netcdf |
match_timestep()
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Match time step |
mean_over_larger_timestep()
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Calculate benchmarking statistics |
metric_AME()
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Absolute Maximum Error |
metric_Frechet()
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Frechet Distance |
metric_MAE()
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Mean Absolute Error |
metric_MSE()
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Mean Square Error |
metric_PPMC()
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Pearson Product Moment Correlation |
metric_R2()
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Coefficient of Determination (R2) |
metric_RAE()
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Relative Absolute Error |
metric_RMSE()
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Root Mean Square Error |
metric_cor()
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Correlation Coefficient |
metric_lmDiag_plot()
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Linear Regression Diagnostic Plot |
metric_residual_plot()
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Residual Plot |
metric_run()
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Model Run Check |
metric_scatter_plot()
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Scatter Plot |
metric_timeseries_plot()
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Timeseries Plot |
read_settings_BRR()
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Read settings from database using reference run id |