All functions

add_workflow_info()

Add workflow specific info to settings list for benchmarking

align_by_first_observation()

align_first_observation

align_data()

Align timeseries data

align_data_to_data_pft()

align_data_to_data_pft

align_pft()

align_pft

bm_settings2pecan_settings()

Move benchmarking settings back in to original pecan settings object

calc_benchmark()

Calculate benchmarking statistics

calc_metrics()

calc_metrics

check_BRR()

Check whether a run has been registered as a reference run in BETY

check_if_legal_table()

check_if_legal_table

check_if_list_of_pfts()

check_if_list_of_pfts

check_if_species_list()

check_if_species_list

clean_settings_BRR()

Cleans PEcAn settings file and prepares the settings to be saved in a reference run record in BETY

create_BRR()

Create benchmark reference run and ensemble

define_benchmark()

Benchmark Definition: Retrieve or Create Bety Benchmarking Records

format_wide2long()

format_wide2long

get_species_list_standard()

get_species_list_standard

load_csv()

load_csv

load_data()

load_data

load_rds()

load_rds

load_tab_separated_values()

load_tab_separated_values

load_x_netcdf()

load_x_netcdf

match_timestep()

Match time step

mean_over_larger_timestep()

Calculate benchmarking statistics

metric_AME()

Absolute Maximum Error

metric_Frechet()

Frechet Distance

metric_MAE()

Mean Absolute Error

metric_MSE()

Mean Square Error

metric_PPMC()

Pearson Product Moment Correlation

metric_R2()

Coefficient of Determination (R2)

metric_RAE()

Relative Absolute Error

metric_RMSE()

Root Mean Square Error

metric_cor()

Correlation Coefficient

metric_lmDiag_plot()

Linear Regression Diagnostic Plot

metric_residual_plot()

Residual Plot

metric_run()

Model Run Check

metric_scatter_plot()

Scatter Plot

metric_timeseries_plot()

Timeseries Plot

read_settings_BRR()

Read settings from database using reference run id