query.trait.data.Rd
Extracts data from database for a given trait and set of species, converts all statistics to summary statistics, and prepares a dataframe for use in meta-analysis. For Vcmax and SLA data, only data collected between April and July are queried, and only data collected from the top of the canopy (canopy height > 0.66). For Vcmax and root_respiration_rate, data are scaled converted from measurement temperature to \(25^oC\) via the arrhenius equation.
query.trait.data(trait, spstr, con = NULL, update.check.only = FALSE, ids_are_cultivars = FALSE, ...)
trait | is the trait name used in the database, stored in variables.name |
---|---|
spstr | is the species.id integer or string of integers associated with the species |
ids_are_cultivars | if TRUE, the IDs in spstr are cultivar IDs, otherwise they are species IDs. Passed on to |
dataframe ready for use in meta-analysis
# NOT RUN { settings <- read.settings() query.trait.data("Vcmax", "938", con = con) # }